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Smith–Waterman algorithm
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#	Item
51	Recent Additions to PipMaker Webb Miller Penn State 1 Add to Reading List Source URL: globin.cse.psu.edu Language: English - Date: 2004-09-09 12:14:40 BLAST Smith–Waterman algorithm Bioinformatics Computational phylogenetics Science
52	Recent Additions to PipMaker Webb Miller Penn State 1 Add to Reading List Source URL: globin.cse.psu.edu Language: English - Date: 2001-09-13 11:05:41 Smith–Waterman algorithm Science Computing Computational phylogenetics Alignment Mouse
53	Notes on Dynamic-Programming Sequence Alignment Introduction. Following its introduction by Needleman and Wunsch (1970), dynamic programming has become the method of choice for ‘‘rigorous’’ alignment of DNA and p Add to Reading List Source URL: globin.cse.psu.edu Language: English - Date: 2002-10-24 13:25:13 Smith–Waterman algorithm Sequence alignment BLAST Dynamic programming Needleman–Wunsch algorithm Structural alignment Computational phylogenetics Bioinformatics Science
54	Define “Alignment” An alignment of two sequences (frequently called a local alignment) can be obtained as follows. 1. extract a segment from each sequence 2. add dashes (gap symbols) to each segment to create equal-l Add to Reading List Source URL: globin.cse.psu.edu Language: English - Date: 2001-08-31 14:54:22 Dynamic programming Computational science Smith–Waterman algorithm Matrices Sequence alignment Needleman–Wunsch algorithm Computational phylogenetics Bioinformatics Science
55	Alignment Scores and PSI-Blast 1 Query: 59 Sbjct: 46 Add to Reading List Source URL: globin.cse.psu.edu Language: English - Date: 2002-09-24 13:11:18 BLAST Smith–Waterman algorithm Sequence alignment Multiple sequence alignment Computational phylogenetics Bioinformatics Science
56	Sketch of the Blast Approach When comparing two sequences, the various versions of the Blast program perform some combination of the following steps. 1. “Word hits” are identified. By word we mean a contiguous segmen Add to Reading List Source URL: globin.cse.psu.edu Language: English - Date: 2002-10-29 11:49:22 BLAST Public domain software Computational science Smith–Waterman algorithm Position-specific scoring matrix Warren Gish Sequence alignment Science Bioinformatics Computational phylogenetics
57	Bootstrapping and Normalization for Enhanced Evaluations of Pairwise Sequence Comparison RICHARD E. GREEN AND STEVEN E. BRENNER Invited Paper The exponentially growing library of known protein sequences Add to Reading List Source URL: compbio.berkeley.edu Language: English - Date: 2003-05-09 16:26:45 Biology Sequence alignment FASTA Structural alignment Smith–Waterman algorithm BLAST Structural Classification of Proteins Protein family Substitution matrix Bioinformatics Science Computational phylogenetics
58	JOURNAL OF COMPUTATIONAL BIOLOGY Volume 17, Number 3, 2010 # Mary Ann Liebert, Inc. Pp. 561–580 DOI: [removed]cmb[removed] Add to Reading List Source URL: www.cs.arizona.edu Language: English - Date: 2010-06-02 18:55:08 Computational science Sequence alignment Multiple sequence alignment Substitution matrix Protein secondary structure Dynamic programming Structural alignment Smith–Waterman algorithm Bioinformatics Computational phylogenetics Science
59	THE USE OF THE SMITH-WATERMAN ALGORITHM IN MELODIC SONG IDENTIFICATION Kent State University, Kent, Ohio © 2008 Jeffrey Daniel Frey Add to Reading List Source URL: jdfrey.files.wordpress.com Language: English - Date: 2008-12-27 13:06:10 Algorithm Kent Mathematics Applied mathematics Science Dynamic programming Computational phylogenetics Smith–Waterman algorithm
60	BFAST: BLAT-like Fast Accurate Search Tool Nils Homer 1 Copyright c UCLA 2008, made for BFAST version 0.6.4e Add to Reading List Source URL: helix.nih.gov Language: English - Date: 2011-02-17 14:46:42 Computational science FASTQ format Sequence alignment BFAST BLAT Smith–Waterman algorithm FASTA Reference genome Computer file Bioinformatics Science Computational phylogenetics